In addition to bug fixes and improved streaming speeds, Juicebox 1.4 has many enhancements, including sharing of bookmarks, custom annotating of 2D features, and creating HiC files from your own data!
Use command line tools to build your own maps and export data! Check out the documentation here.
Watch this short video for a quick overview of Juicebox!
If you use Juicebox in your research, please cite:
Neva Durand*, James Robinson*, Muhammad Shamim, Ido Machol, Jill Mesirov, Eric S. Lander, and Erez Lieberman Aiden. "Juicebox: a visualization system for Hi-C contact maps with unlimited zoom." (Submitted).
Suhas S.P. Rao*, Miriam H. Huntley*, Neva C. Durand, Elena K. Stamenova, Ivan D. Bochkov, James T. Robinson, Adrian L. Sanborn, Ido Machol, Arina D. Omer, Eric S. Lander, Erez Lieberman Aiden. "A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping." Cell 159, 2014.
* contributed equally